Halotype-based variant caller for sequencing data including next-generation sequencing (NGS).
This app combines powerful cloud computing with the Platypus tool for variant detection/discovery. It analyzes a BAM file and generates a VCF file that contains a list of identified variants including genotype calls and likelihoods.
This app is only compatible with BAM files obtained from genome sequencing. When this app is started, only BAM files (filenames that end with .bam) will be able to be selected.
$19 = unlimited use for 30 days
You'll receive an email notification with a link to the app results, which will be a downloadable VCF file. The VCF file will be stored in your account and you can also use it with other apps.